Index

_

_build_exc() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _build_exc_edges() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _build_exc_nodes() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _build_inh() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _connector_func() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _gen_exc_spikes() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _gen_group_spikes() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _gen_inh_spikes() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _get_directory_prefix() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1]

_make_rasters() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _modify_jsons() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _modify_sim_config() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _norm_connect() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _norm_rvs() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _save_nets() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _set_location() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _set_prefixed_directory() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] _update_cellvar_record_locs() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1]

A

add_syn() (L5NeuronSimulation.clustering.Cell method), [1] apic_groups (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute)

append_ds() (L5NeuronSimulation.raster_maker.SonataWriter method), [1] append_repeat() (L5NeuronSimulation.raster_maker.SonataWriter method), [1]

B

bmtk_id (L5NeuronSimulation.clustering.Segment attribute)

build() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1]

C

calc_dist() (in module L5NeuronSimulation.clustering) Cell (class in L5NeuronSimulation.clustering) cells (L5NeuronSimulation.clustering.FunctionalGroup attribute) center (L5NeuronSimulation.clustering.Cluster attribute) (L5NeuronSimulation.clustering.FunctionalGroup attribute) close() (L5NeuronSimulation.raster_maker.SonataWriter method), [1]

clust_per_group (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute) Cluster (class in L5NeuronSimulation.clustering) cluster_segs (L5NeuronSimulation.clustering.Cluster attribute) clustering_func (L5NeuronSimulation.clustering.FunctionalGroup attribute) clusters (L5NeuronSimulation.clustering.FunctionalGroup attribute) create_cells() (L5NeuronSimulation.clustering.FunctionalGroup method), [1]

D

datasets (L5NeuronSimulation.raster_maker.SonataWriter attribute)

dend_groups (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute) dist_inh_stim (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute)

E

exc_stim (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute)

F

file (L5NeuronSimulation.raster_maker.SonataWriter attribute)

FunctionalGroup (class in L5NeuronSimulation.clustering)

G

get_key() (in module L5NeuronSimulation.my_plotting) get_seg() (L5NeuronSimulation.clustering.Cell method), [1]

group (L5NeuronSimulation.raster_maker.SonataWriter attribute) group_segs (L5NeuronSimulation.clustering.FunctionalGroup attribute)

L

L5NeuronSimulation.clustering module L5NeuronSimulation.FullSimulation.build_network module L5NeuronSimulation.my_plotting module

L5NeuronSimulation.raster_maker module L5NeuronSimulation.run module load_dataset() (in module L5NeuronSimulation.my_plotting)

M

make_clusters() (L5NeuronSimulation.clustering.FunctionalGroup method), [1] make_noise() (in module L5NeuronSimulation.raster_maker) make_save_spikes() (in module L5NeuronSimulation.raster_maker) make_seg_sphere() (in module L5NeuronSimulation.clustering) minmax() (in module L5NeuronSimulation.raster_maker)

module L5NeuronSimulation.clustering L5NeuronSimulation.FullSimulation.build_network L5NeuronSimulation.my_plotting L5NeuronSimulation.raster_maker L5NeuronSimulation.run

N

n_apic_exc (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute) n_apic_inh (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute) n_cells (L5NeuronSimulation.clustering.FunctionalGroup attribute) n_clusters (L5NeuronSimulation.clustering.FunctionalGroup attribute) n_dend_exc (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute) n_dend_inh (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute)

n_prox_dend_inh (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute) n_soma_inh (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute) n_syns (L5NeuronSimulation.clustering.Cell attribute) (L5NeuronSimulation.clustering.Cluster attribute) name (L5NeuronSimulation.clustering.FunctionalGroup attribute) net (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute) num_set (L5NeuronSimulation.clustering.Cell attribute)

P

params (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute) plot_all_v() (in module L5NeuronSimulation.my_plotting) plot_group() (in module L5NeuronSimulation.clustering)

plot_se() (in module L5NeuronSimulation.my_plotting) plot_v() (in module L5NeuronSimulation.my_plotting) prox_inh_stim (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute)

R

random_seg() (L5NeuronSimulation.clustering.Cluster method), [1]

run_network() (in module L5NeuronSimulation.run)

S

save_groups() (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder method), [1] seed (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute) Segment (class in L5NeuronSimulation.clustering) shift_exc_noise() (in module L5NeuronSimulation.raster_maker) SimulationBuilder (class in L5NeuronSimulation.FullSimulation.build_network)

SonataWriter (class in L5NeuronSimulation.raster_maker) start_id (L5NeuronSimulation.clustering.FunctionalGroup attribute) syn (L5NeuronSimulation.FullSimulation.build_network.SimulationBuilder attribute) syn_per_cell (L5NeuronSimulation.clustering.FunctionalGroup attribute) syn_segs (L5NeuronSimulation.clustering.Cell attribute)

X

x (L5NeuronSimulation.clustering.Segment attribute)

Z

zscore() (in module L5NeuronSimulation.raster_maker)